The OpenMM Tutorials
====================

Getting Started
---------------

These tutorials will take you through the basics of using OpenMM to set up and
run molecular dynamics simulations.  If you are completely new to using OpenMM,
working through these tutorials in order is the best place to start.

.. toctree::
    :maxdepth: 1

    notebooks/tutorials/getting_started
    notebooks/tutorials/loading_and_reporting
    notebooks/tutorials/building_systems

Beyond the Basics
-----------------

Once you have familiarized yourself with the basics, consult these tutorials for
examples of using OpenMM to perform more complex simulation tasks.

.. toctree::
    :maxdepth: 1

    notebooks/tutorials/simulation_parameters
    notebooks/tutorials/constant_potential
    notebooks/tutorials/coarse_grained_polymer
    notebooks/tutorials/Alchemical_free_energy_calculations
    notebooks/tutorials/Beta_2_adrenergic_receptor_B2AR_membrane_protein_simulation_with_CHARMM
    notebooks/tutorials/HSP90_with_ADPMg2_simulation
    notebooks/tutorials/Histone_methyltransferase_simulation_with_a_multisite_water_model_TIP4P-Ew
    notebooks/tutorials/Histone_methyltransferase_simulation_with_multisite_Zn2_structural_ions
    notebooks/tutorials/Running_a_REST_simulation
    notebooks/tutorials/umbrella_sampling