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# The OpenMM Cookbook


## Getting Started

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caption: Getting Started
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notebooks/cookbook/first_simulation.ipynb

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## Simulation Protocols

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notebooks/cookbook/Changing Temperature and Pressure
notebooks/cookbook/Saving Systems to XML Files
notebooks/cookbook/Merging Molecules
notebooks/cookbook/Adding Hydrogens to Nonstandard Molecules
:::

## Restraints, Constraints, and External Forces

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caption: Restraints, Constraints, and External Forces
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notebooks/cookbook/Applying a Constant External Force
notebooks/cookbook/Constraining Atom Positions
notebooks/cookbook/Restraining Atom Positions
notebooks/cookbook/Restraining Dihedrals
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## Analysis and System Inspection

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notebooks/cookbook/Analyzing Energy Contributions
notebooks/cookbook/Computing Interaction Energies
notebooks/cookbook/Querying and Modifying Charges and Other Parameters.ipynb
notebooks/cookbook/report_minimization.ipynb
:::


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[Notebooks by Tag](genindex)